Wcalc - 2.3

Wcalc is a very capable calculator. It supports abitrary precision, has standard functions (sin, asin, and sinh for example, in either radians or degrees), many pre-defined constants (pi, e, c, etc.), support for using variables, "active" variables, a command history, hex/octal/binary input and output, unit conversions, embedded comments, and an expandable expression entry field. It evaluates expressions using the standard order of operations.

Wcalc also comes in a command-line version that can be compiled on most (if not all) forms of Unix.


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Xphile - 1.6

Xphile is a radiology teaching library allowing browsing by system, pathology, and region. Store images and movies and search by case description.


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Quotient - 1.4.5

This program writes the quotient (result) of any division equation, to a user-specified level of decimal precision (which can extend into the hundreds of thousands of digits and beyond), into a text area, from which it can be exported, or copied to the Clipboard. A repetend (repeating-decimal) detector rounds out the program's functionality.


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G*Power - 3.0.4

G*Power 3 is a statistical power analysis program. It covers many different statistical tests of the F, t, chi-square, and z test families as well as some exact tests. G*Power 3 provides improved effect size calculators and graphics options, it supports both a distribution-based and a design-based input mode, and it offers five different types of power analyses. G*Power 3 is free.


Website
Download G*Power Intel
Download G*Power PPC

Plot - 0.997

Plot is a scientific 2D plotting program for Mac OS X. Plot is designed for everyday plotting, it is easy to use, it creates high quality plots, it allows easy and powerful manipulations and calculations of data, and it is free.


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Noble Ape Simulation - 0.685

The Noble Ape Simulation creates a diverse landscape, and simulates the ape inhabitants cognitive processes. It features a new colour third-person-perspective landscape rendering engine (Ocelot). The compressed StuffIt archive contain the application and manual.


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TablePod - 1.1

TablePod is for the chemistry student or maybe the professional chemist. It gives you a periodic table of the elements, on your iPod. TablePod, is different from the other (one, maybe two?) as it gives you a visual table. Each elements has its own image.

The elements backgrounds have a color that corresponds to the type of elements (Alkali Metal, Noble Gas, so forth). For now TablePod is for quick reference, it has name, number, symbol, weight, and type.


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BOINC - 5.10.7

BOINC is a software platform for distributed computing using volunteered computer resources. Many different projects can use BOINC. Projects are independent; each one operates its own servers and databases. Participants can participate in multiple projects; they control which projects they participate in, and how their resources are divided among these projects. When a project is down or has no work, the resources of its participants are divided among other projects.


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TAMS Analyzer - 3.34b7

Coding and extraction software for qualitative research projects. Supports multiple coders, hierarchical codes, complex searching for information, many options for formatting the output of searches, and easy export to Excel and other databases.


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VokabelTrainer - 0.8

VokabelTrainer is a little tool to help you learning words in english, german, french or whatever language you like. It supports saving and loading word lists to files which is useful for sending or transporting them to another computer. VokabelTrainer is localized in German and English, but you can use it to learn any language.


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LXVII - 1.1.1

LXVII is a faithful simulation, of the Hewlett-Packard HP-67 programmable scientific calculator. It has the same stack depth and number of memory registers and program steps as the original. The button layout, numeric display formats and program key-codes are also similar although the display has been expanded to 14 significant digits with a 3 digit exponent.
New features were designed with the intent that they extend existing features in a compatible manner.
New features include:

* It is document based, so multiple calculators can be active at the same time.
* It is multi-threaded so multiple programs can be running at the same time on as many CPUs as are available on the system.
* The document based architecture, along with user defined function keys, allows users to redefine LXVII's functionality so that each document is essentially a new calculator, tailored to the user's specific task.
* A paper tape panel like that found on the hp-97 desktop calculator is provided for printing out memory registers, intermediate stack values and program listings.
* A pull-out drawer can display the current values of the stack, the last-X register, the program counter, all memory locations and all program steps in memory. All values except the program steps can be edited directly within the drawer interface.
* All buttons have an assigned single-keystroke key so that the user can get to all calculator functions without the need of the mouse.
* All buttons and button labels have active tooltips specifying the button's functions and it's shortcut.


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Transform - 0.10.5

I find Excel to be brilliant for making pretty sequences and sequence alignments - however each character needs to be in a separate cell.

So I wrote a little utility to do often used text / sequence transformations:

* Insert Tab before / after each character
* Insert Return after each character
* Keep only letters a-Z
* Format in blocks of 3, 10, 50, 100
* Remove leading / trailing / multiple spaces
* Reverse / complement/ invert DNA sequence
* Translate DNA sequence in frame 1 / 2 / 3
* Backtranslate protein into human / E. coli DNA (using the most frequently used codon)
* Convert 3-Letter AminoAcid code into 1-Letter code
* Convert 1-Letter AminoAcid code into 3-Letter code (spaced / tabbed)
* Get protein sequence info

... and much more (just ignore the bits you don't need)

If there are other transformations you'd like just drop me a line .

Please note that this program will run as it is - there is no installation, no files will be put anywhere (registry, system, etc in the Windows version) so it should even run if you are on "managed computers" like we are in our lab (which is a pain in the neck in 99% of all cases - IT support should be there for us, not the other way round)


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Seattle Heart Failure Model - 1.01

Heart failure is a chronic condition where the heart is not able to pump blood as effectively as it should. The probability of survival for a patient with heart failure depends on a number of factors, and can be improved by an range of treatments. This program uses data from six research studies on heart failure to calculate an individual patient's probability of survival with heart failure, and the potential benefit of various medical and surgical treatments. It is intended for use by medical professionals who are trained in the treatment of heart conditions, to help inform decisions on treatment, and counsel the patient. The user can choose kg or lbs for weight, and American or SI units for labs. This version will expire on August 1, 2007, but a new version will be available for download one month prior to that date.


Website
Download Seattle Heart Failure Model Intel
Download Seattle Heart Failure Model PPC

Bugs On The Run - 1.3

Bugs On The Run is an artificial life simulation where organisms (bugs) move in a 2D world and try to survive. There are various ways to control the simulation and there is an emphasis on high performance for some settings. In the main folder an application is included, and for developers carbon C source files and binaries for an Xcode project with classic- and carbon-events versions are also available. An older legacy version 1.2 is PPC-only, and has many types of projects for developers (CFM/Mach-o, classic/carbon events, res/nibs, CW/Xcode, C/FutureBasic) - is still available for download as well.


Website
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Trishear3D - 3.4

A program to run forward, three-dimensional trishear models. Trishear is a kinematic model for fault-propagation folding. Trishear3D is freeware, but only for academic purposes. If you want to use the program for consulting, please contact me.


Website
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Panoply - 2.2.1

Cross-platform Java application which plots raster images of globally gridded netCDF datasets. Features include:

* Select from a menu of over 30 global map projections.
* Slice specific latitude-longitude arrays from multidimensional arrays which also have dimensions in altitude, time, etc.
* Combine two arrays in one plot by differencing, summing or averaging.
* Draw continents outlines or overlays on the plot.
* Apply any PAL, ACT, or CWC color table to plot scale.
* Save plots to disk as PNG or GIF images.


Website
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CLC Free Workbench - 3.2.4

CLC Free Workbench 3.1 creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options. Some bioinformatics features are: - GenBank searching and viewing (linear and circular views) - Multiple alignment of DNA, RNA and proteins (2 alignment algorithms) - Advanced alignment editing and sequence editing - Joining multiple alignments and multiple sequences into one - Open reading frame determination - Translation from DNA to proteins (all genetic translation tables) - Reports with residue composition, molecular weight and iso electric point (for proteins) - Neighbor-joining and UPGMA phylogenies - Interactive restriction site analysis and viewing - Other reporting facilities - Import/export to a number of data formats - Launch of external files - Detailed History Log - Batch runs of analyses such as DNA to protein translation


Website
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Eigenmath - 130

Eigenmath is a free symbolic calculator that is fun to use. The manual includes example solutions for typical problems in calculus and linear algebra.


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iMol - 0.40

iMol is a simple molecular visualization program for Mac OS X. iMol allows loading molecular files in several formats (e.g. PDB, MOL2, XYZ) and displaying them using various rendering styles and coloring schemes. The output pictures can be saved as bitmaps, POV-Ray files, PostScript files, or QuickTime movies.


Website
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RAAViewer - 1.0.1d0

A program that displays images of interest to radiologists and others dealing with human anatomy in medicine. Anatomic structures are labeled and linked to in-depth information about the structure. Illustrations, CT and MRI images will be utilized.


Website
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